Sentence examples for proportion of pathways from inspiring English sources

Secondary metabolism shows a lower proportion of pathways and genes under diurnal control (Figure 3) but phenylpropanoid (lignin) metabolism, mevalonate and momilactone pathways show dawn activation (Figure 3, 0 h and 20 h).

Similar to biological processes, early during the differentiation a significant proportion of pathways was utilized by both, iTregs and Teffs, whereas at day 10 a pathway dichotomy became obvious (Fig. 5).

These statistics show that an important proportion of pathways are still not completely resolved at the gene level, which limits in silico reconstructions of genome-scale metabolic models [ 28, 29].

According to Sorokina et al. [ 41], 22.4 % of enzymatic activities from 5,096 ECs were orphans, and a large proportion of pathways (87 % in KEGG and 36%% in MetaCyc) contain at least one orphan activity.

Resulting annotations are used by the PathoLogic algorithm implemented in Pathway Tools to predict metabolic pathways based on multiple criteria including proportion of pathways found, pathway specific enzymatic reactions, and purported taxon-specific pathway distributions.

Among the top-ranked pathways, we found those related to general functions (e.g., purine metabolism, cell cycle) and others with more specific functions, including a high proportion of pathways related to oxidative stress and inflammation [ Table 3; for a complete pathway list, see Supplementary Material, Table S5 (doi:10.1289/ehp.0901300)].

First-generation methods take a list of genes over-, under- or differentially expressed in a study, compute the proportion of pathway members therein compared with the proportion in a background dataset, and statistically test for enrichment.

For the other three phenotypes, the proportions of pathways found by SNAL and NBF are >66%.

Thus allowing for neutral changes both increases the number of total accessible pathways and the proportion of accessible pathways that include a back mutation (from 33.3% to 87.6%).

The proportions of pathway and non-pathway patients in each of the five PSI risk classes were as follows: I (15% vs. 12%), II (44% vs. 34%), III (24% vs. 26%), IV (16% vs. 26%), and V (1% vs. 2%).

The proportion of common pathways between the UNC and BI data sets increased from counts with 20/20 pathway selections to 10/10 selections, and the same holds for the selected leading edge gene ratios.