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Moreover, in all these comparisons, the proportion of origin conservation in Sakl0C-left was not statistically different from that in other chromosomes.
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Therefore, a higher proportion of origins was detected using the chromosome 6 data.
According with the more recent European Centre for Disease Prevention and Control (ECDC) surveillance report focusing the TB epidemiological situation, in 2012 the overall proportion of TB cases of foreign origin in the European Union/European Economic Area (EU/EEA) was 26.8% with some northern European countries showing rates as high as 85.4% [ 3].
The genetic background of these mice is largely from C57BL/6 origin with an undetermined proportion of 129 origin.
The proportions of origin-containing and origin-devoid regions associated with at least one synteny breakpoint are similar in the L. kluyveri genome (76% [192/252] vs. 75% [659/876], respectively, chi-squared P value = 0.8).
Additional file 1: Figure S7 shows the proportion of each origin in the individuals of 1 kG and GS SFHS.
The correlation between the estimated proportion of African origin and the percentage of the genome covered by peaks was 0.94 showing that our estimates correspond well with percentage of African genes in the individuals (Additional file 1: Figure S8).
SF8 has a large proportion of PS origin and can therefore be used to produce AA, SFA97 constitutes a group closed to direct foreign influences, whereas SFB98 individuals can have a parent from another breed (under some conditions).
The correlation between the estimated proportion of African origin using ADMIXTURE and the percentage of the genome covered by peaks was high (0.94) showing that our estimates correspond well with percentage of African genes in the individuals (Additional file 1: Figure S8).
Overall, the proportion of foreign-origin cases has been increasing since 2001.
The proportion of hatchery-origin fish in the broodstock varies depending on the size of the naturally spawning population.
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