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Concordance was defined as the proportion of alignments in which the ICD10 code icon and the MeSH descriptor icon were identical.
The underlying philosophy was that if genome maps were correctly assembled, there should be a large proportion of alignments between genome sequences and maps.
These chromosomes show the largest difference in percent identity and correspond to the greatest proportion of alignments (total number of SD pairs).
From these comparisons, we found that the distribution of the scores resembled an extreme value Gumbel distribution (Additional file 2: Figure S2), with the highest proportion of the scores close to 1, i.e., the major proportion of alignments occurs between dissimilar nrESS.
Similar(56)
For example, of the ≈27,000 families in the Phytome database [ 30] for which there are three or more sequences, the average proportion of alignment gaps is 37%.
Based on patterns of spatial bias, proportion of alignment affected by LGT, directionality, and absence of association with MGE, we conclude that DCT is likely the predominant mechanism of LGT among M. canettii.
However, while the relative numbers of significant alignments identified was affected by altering the wordsize, the relative proportions of alignments between the different pseudomolecules stayed, more or less, the same [data not shown, but as illustrated for FAexpTRL in Additional file 3].
The sum-of-pairs score (SPS) is the proportion of aligned pairs of nucleotides/amino-acids from the true alignment that are also aligned together in the test alignment.
The alignment length coverage is calculated as the proportion of aligned length in the whole read.
The percentages were calculated as the proportion of pairwise alignments at each percent identity.
The increased proportion of genome alignments without a spanning intron (single exon transcripts) observed in An. albimanus could result from incorrect splitting of the transcript during the assembly of transcriptional units having more than one exon.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com