To adjust for the stratified sampling design, results were weighted to the site-specific population proportions from which the samples were drawn.
This problematic behavior is not apparent, however, when accuracy is measured only as the correspondence between the proportion of replicates in which some topology is true and the proportion of replicates from which it is inferred.
For the "near core" pangenes, we asked what proportion of genomes from which these genes were absent at the protein level still contained them at the whole genome DNA level.
In contrast, for a pig disease, the proportion of farms from which infection can spread via movements is very low throughout the year (< 0.005), with no obvious seasonal peaks, and no involvement of the markets.
We then asked in what proportion of genomes from which such a pangene is absent at the protein-level, it is still found at the DNA level (see Materials and Methods).
Importantly, from 21 d to 42 d the proportion of birds from which Salmonella was recovered across all treatments decreased from a mean of 94% to 26% (Table 2).> -wrap-foot> Treatment designations are Ctl, control; FO, feed-only; WO, water-only; and FW, feed and water.
However, there were differences in the magnitude of the proportion of farms from which infection can spread depending on whether the primary outbreak was located within the Scottish mainland or on a Scottish island, as well as between individual parts of the mainland and between individual archipelagos.
Timeliness of stool collection: There was a steady increase in the proportion of cases from which two adequate stool specimens (>8 grams) were collected with an interval of 24-48 hours between collections, given that the onset of paralysis was within 2 months of notification.
The indicated size of these polypeptides, and their immunoreactivity, suggest that the majority of ButaIT/GNA is full-length protein with the C-terminal extension intact, with a small proportion of ButaIT/GNA from which the C-terminal his tag has been removed.
