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We generated both global and local African ancestry proportion estimates for each of the samples in our data.
The MLR classification procedure provides proportion estimates for each emotion; this results in codes for all emotions ranging between 0 and 1, and, across all emotions, the codes always sum to 1.0.
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For each segment (decision node labeled (1) in Figure 1), a binomial test was performed to identify loss of heterozygosity (segments for which the proportion of heterozygous SNPs was significantly lower than the proportion estimated for the whole genome).
27 To estimate the fraction of the population in each 5-year age group for individuals aged 15-59 in every governorate, we assumed that these proportions were the same as the proportions estimated for the national sample in the EDHS.
The population proportions estimated for solvent users and sex workers were higher in arm 2 than in arm 1 (0.43 for solvent users in arm 2 vs. 0.30 in arm 1 and 0.13 for sex work in arm 2 vs. 0.06 in arm 1).
A random-effects meta-analysis was used to pool study proportion estimates while accounting for differences in study quality, study population and study design [ 13].
For face time proportion, estimated means for each diagnostic group are shown in Fig. 2. The 3-way interaction of diagnosis × age × segment was not significant (χ(3) = 1.42, p = .70) nor were the 2-way diagnosis × time (χ(3) = 2.81, p = .42) and diagnosis × segment (χ(3) = 0.80, p = .85) interactions.
Incidence and proportion estimates were not calculated for 2002, given that only 2 months of data were available.
For both proportion estimates, 95% CIs based on the F distribution method were provided [ 20].
For each individual, the A2 proportion estimate was used for fitting all visual pigment templates to the spectral sensitivity curve.
CI calculated for a proportion estimate as follows: (estimate) ± 1.96 x √ estimate x (1 – estimate)/n).
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