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Justification of the indirect link with properties: Prediction does not have a Property identifier attribute.
Justification for the indirect link with the descriptors: Model has a Property identifier attribute but no matching Descriptor identifier attributes.
The Property identifier attribute was ruled out deliberately, because it would violate basic data schema normalization principles and introduce a loophole for creating QDB archives that contain Predictions but not Models.
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The name attribute of every DataField element must be a valid Property or Descriptor identifier.
For example, Parameter values and references cargos contain Compound identifiers, whereas Model PMML cargo contains Property and Descriptor identifiers (Figure 7, dashed arrows).
The properties include sample identifier, strand, read group, mapping quality, base call at a particular position, pair distance and orientation, custom tags and more.
The Model type specifies one attribute: ▪ Property Id is the identifier of the Property.
These can be used to provide users with more information about the object in question, for example if the nodes in the graph would represent proteins and edges would represent protein-protein interactions, the custom node properties could contain protein identifier and description of its function while edge custom properties could contain information about the type of the interaction.
We tested these properties based on country identifier.
The cross-references were extracted by retrieving all classes that had 'hasDbXref' (http://www.geneontology.org/formats/oboInOwl#) property to UMLS concept identifiers (CUI) prefixed with 'UMLS_CUI:'UMLS_CUI
Instances of the ot:Feature class (Appendix 9) are used to represent arbitrary properties, including chemical identifiers (e.g. STRUCTURE_ChemicalName_IUPAC), properties like molecular weight (e.g. STRUCTURE_MolecularWeight), or calculated descriptors (Appendix 5) and model predictions (Appendix 11).
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