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OpenMM Zephyr implementation of GPU accelerated version of GROMACS [ 29] suite of programs was used to simulate the systems.
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Both Radiance and Ecotect programs were used to simulate the required design configurations.
Then this computer program was used to simulate the heat transfer processes during hot water pasteurization of frankfurters.
In addition, the finite element program was used to simulate the behavior of composite sandwich beams and it was predicted that they would exhibit analogous behavior.
A coupled liquid water, water vapor, and heat transport model, implemented in the HYDRUS-1D program, was used to simulate diurnal and seasonal soil temperature changes in the engineered cover installed at the site.
The SUBSTOR-Potato model (embedded within the DSSAT program) was used to simulate the baseline and future irrigation needs (mm) and yield (t ha−1) for selected emissions scenario (SRES A1FI and B1) for the 2050s, including CO2 fertilisation effects.
A newly constructed computer program was used to simulate partitionless growth of α in γ of Fe-Ni-C alloys, taking into account so-called solute drag by evaluating the dissipation of Gibbs energy due to diffusion inside the interface and in the nickel spike being pushed in front of it.
For shots of an imploding planet, the same explosion program was used to simulate it breaking up, while the animators could manually composite multiple layers of rocks and wind sucking into the planet.
Matlab (MathWorks, Kista, Sweden) programming was used to simulate the growth of each population according to these rules.
The same program was used to simulate plasma 5-FU concentrations during treatment with S-1.
Hudson's program was used to simulate 100,000 replicates of n = 22 chromosomes, each with 100 segregating sites and no recombination (for neutral models, the expected site frequency spectrum is independent of the recombination rate).
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