Sentence examples for programs splice from inspiring English sources

For the splice-site prediction programs (Splice Site Finder, MaxEntScan, NNSplice), wild-type score (wt) and mutation score (mut) were compared using the following cutoffs.

The program Splice Predictor [ 43] was used to guide identification of splice sites.

The results of the analysis using the program Splice Sequences Finder version 2.2 (http://www.umd.be/SSF), which predicts exonic motifs, showed that three exonic splicing enhancer motifs and one exonic splicing silencer motif overlap the rs4072037 SNP in the presence of either the A or the G alleles.

Based on these observations and on the remarkable consistency of the AS switch to MADD in glioblastoma samples as well as its occurrence in the mouse models, we suggest that this event likely reflects a programmed splicing switch associated with tumour development and relates to lack of differentiation rather than to a randomly selected trait.

The entire sequence of the MTRR gene was scanned by six different programs for splice site prediction (for details see Materials and Methods) and the scores of the splice sites of all the MTRR constitutive exons and the pseudoexon were compared (Table 1 and Supp. Table S1).

This requires the use of programs called spliced-mappers.

These programs are splice-site aware and incorporate intron-like gaps.

Software programs for splicing analysis use a wide variety of bioinformatic approaches.

Altogether, these observations indicate that AS plays a major role in EMT by establishing a specific program of splice variants of genes important for epithelial and mesenchymal cell morphology and motility.

Although the genomic architecture of fly and worm genes differ greatly from higher eukaryotes, precluding direct comparison of splicing events, it will be interesting to further explore whether these evolutionarily conserved orthologues of the Esrps also regulate programs of splicing that function in similar processes and pathways.

Most exons are controlled by combinations of factors, and there is likely to be extensive intersection between the PTBP2 regulatory program and splicing programs driven by other splicing factors (Calarco et al., 2011).