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Conjointly, we further queried GEO using the eSearch Entrez Programming Utilities (E-utils) service to fetch additional identifiers (IDs), which were not picked up by the previous query (http://www.ncbi.nlm.nih.gov/geo/info/geo_paccess.html).html
An abstract for each PMID was retrieved from Medical Literature Analysis and Retrieval System Online (MEDLINE) using National Center for Biotechnology Information (NCBI)'s E-Utils (NCBI Entrez Programming Utilities Help: http://www.ncbi.nlm.nih.gov/books/NBK25500). Abstracts are downloaded in XML format, and XML-escaped characters are converted to their text characters (e.g. A-> T becomes A-> T
These Entrez Programming Utilities, or eUtils, include EInfo, ESearch, EPost, ESummary, EFetch, ELink, EGQuery, ESpell and they are all wrapped into SOAP interface for easier communication.
For the purpose of this study, the PubChem Compound and PubChem BioAssay databases were mined for inactive compounds, and an automated extraction pipeline was developed to obtain inactive compound-ligand pairs from the PubChem database using the Entrez Programming Utilities (EUtils) [54, 55].
The Entrez Gene IDs, symbols, and descriptions of genes for all tested transcripts were attained by Entrez Programming Utilities (eUtils) using GI number with the aid of a Perl script.
All sequences were downloaded with Entrez Programming Utilities and our own PERL scripts (99).
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This project is a spin-off from ETH in Switzerland and is a standalone research project turned programming utility.
We used Perl script with NCBI Entrez Programming Utility functions (e-utilities) to query NCBI literature databases.
Under the new program, utilities will buy solar, biomass, wind, geothermal and hydro power.
These starting models were then filtered to 50 Å resolution and used in cycles of 3D projection matching and angular reconstitution using the SAMUEL program utilities running the SPIDER program (https://sites.google.com/site/maofuliao/samuel).com/site/maofuliao/samuel
If you don't see an uninstaller program, you can try the Add/Remove Programs utility in Windows.
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