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Diverse Conformation Generation protocol implemented in LigandScout program was used to generate conformations using the best conformation model generation method.
- 1 Used in the analyses A computer program was used to generate a Catania-Reynolds distribution of intervals for the VI 180 s schedule [ 44, 45].
The LigandScout program was used to generate the conformations, using the BEST conformation model generation method.
MEGA 6.06 program was used to generate phylogenetic tree.
The DIPS software program was used to generate the stereonets from the scanline survey data collected.
The simulation program was used to generate the reverberant speech data from the clean speech and the RIR.
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The use of the ancillary program to generate the SBML is necessary because the possibility that many regulatory PTMs may be added, each independently of the others, means that a large number of chemically distinct forms of the FOXO molecule must be taken into account, and the program is used to generate them.
Raw counts generated from HTSeq-count program were used to generate differentially expressed genes with DESeq2 package in R [ 36, 37].
The output from these two programs was used to generate custom repeat libraries, which were subsequently used to mask the M. graminicola genome using RepeatMasker [ 15].
To complement the Cufflinks-generated gene models, ab initio gene prediction programs were used to generate additional gene models from the reference genomic sequence (Additional file 1: Figure S1A).
Based on the observed application energy profile, an automated recommendation system that utilizes artificial selection genetic programming is used to generate the energy optimizing program mutants while preserving functional accuracy.
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