Sentence examples for program was used to align from inspiring English sources

To identify alternative spliced transcripts for each gene, spidey, a cDNA-to-genomic alignment program, was used to align spliced sequences to genomic sequences, using local alignment algorithms and heuristics to put together a global spliced alignment [ 38].

ClustalW2, a multiple sequence alignment program was used to align each Drosophila protein sequence against all the human protein matches from the blast searches to identify all the conserved tyrosines that are tyrosine phosphorylated in each of the 290 Drosophila proteins.

The MAQ program was used to align the remaining sequence reads with the genome template, permitting up to three mismatches per 36-nucleotide read.

The ClustalW program was used to align nucleotide sequences.

The blastall program was used to align each platform's probe sequences to local transcript databases.

The Sim4 program was used to align each cynomolgus monkey cDNA sequence with the human genome sequence [ 31].

The ClustalX program [44] was used to align and to construct the phylogram of CHIKV proteomes.

The rVista 2.0 program [38] was used to align and scan each gene for potential conserved HRE core sites located within non-coding regions between 2 kb upstream and 1 kb downstream of the gene.

The program ClustalX was used to align the amino acid sequences.

The program, MUSCLE was used to align these sequences [ 32, 33].

To identify 5Mg-specific SNPs, the program BLAT was used to align the 100-bp flanking sequences of 5MgS-specific SNPs against the 5AS, 5BS and 5DS reference contigs.