GO-2D outputs the observed p values for the combined categories, which can be used as input data for some more complicated multiple comparisons by existing tools, e.g., the program for Storey's Q value [ 17].
GO-2D can also output all the observed p values, which can be used for other complicated multiple tests correction by many other existing tools such as the program for Storey's Q value [ 17]. (6) Results: GO-2D allows users to save the results for detailed examination of the identified modules.
We used the program Q-value (Storey and Tibshirani 2003) to evaluate P values with FDR ≤ 0.01.
The calculated p-values were exported into Q-value, and a false positive rate was estimated following the program's instructions (Storey and Tibshirani 2003).
When Cruz was in his early teens, in Houston, his parents enrolled him in an after-school program run by Rolland Storey, a retired energy executive who wanted to instill the values of the free market in young people.
False discovery rate (FDR) (q-values) was calculated using an R program QVALUE according to Storey and Tibshirani [ 25].
The false discovery rate (Q value) was calculated for each P-value using R program according to the Storey and Tibshirani method [ 37].
While more complex regulation programs are of increasing interest (Storey et al., 2005), the combinatorial nature of such problems and the large number of loci call for improved methods that allow discovery of more complex regulation programs involving more than one locus and one gene.
During the optimization of the whole-cell solution, the concentrations of free Mg2+and of Mg2+complexed with ATP, GTP and EGTA were calculated using the computer program Bound and Determined (Brooks & Storey, 1992).
A program of displacement based loading tests was carried out on single-storey shear walls of various configurations to investigate their performance and to establish a comprehensive database of information.
