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A homology model of the enzyme was used to search the Cambridge Structural Database using the program dock 3.5.
In this study we utilised the molecular modelling program DOCK to analyse the 249,071 compounds of the National Cancer Institute Database and retrieved those compounds with high predicted affinity for XR.
Large-scale computational screening, employing the program DOCK, was used to perform atomic-level docking of 1.4 million small molecules to prioritize those making favorable interactions with the BoNT/E site.
The program DOCK 3.5.54 was used to dock the fragment database into the protein binding site [48], [49].
The screening was accomplished using a computer docking program, DOCK, that docked each chemical of the database into the active sites of the enzymes and evaluated the shape complementarity of the docked compound relative to the active sites.
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The Italian plan to train the Libyan Coast Guard has already run afoul of Libya's fractious political scene after the San Giorgio, an Italian Navy vessel participating in the program, docked in western Libya last month.
The FlexX docking program accurately docked the reference ligand with the RMSD value of 0.7 Å.
It is a grid based docking which uses CHARMM molecular simulation program to dock ligands within the active site of receptors.
The rigid-body protein-protein docking program ZDOCK was then used to map the antigen-antibody contact sites.
In this work, the focus has been set on the implementation and the validation of the fast and robust knowledge-based objective function PMF04 into the molecular docking program PARADDOCKS (Parallel Docking Suite) [1].
The EUDOC program uses docking algorithms that differ from those of DOCK [3].
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