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PCA analysis of the mutant data set combined with the wild type temporal profile data set revealed three homogeneous clusters (Figure 6A).
This observation was verified by RT-qPCR experiments for selected genes exhibiting temporal profiles 5, 6, 7 and 8 in the wild type temporal profile data set.
The corresponding plots when using a profile data set (NHLBI data set) are shown respectively in Figure S6 (similar to Figure 6) and Figure S7 (similar to Figure 7).
miRNAs with P-values below a critical P-value (typically 0.01) are the differentially detected signals and were selected as our global miRNA expression profile data set (of mouse BASCs) in BASCGAP.
This cluster was characterized by a strong induction in the genes that had profiles 5, 6, 7 and 8 in the wild type temporal profile data set whereas the incipient nodule-specific profile 4 genes were not activated.
The wild type incipient nodule stage was characterized by the strong expression of genes that exhibited profiles 4, 5 and 6 in the wild type temporal profile data set (Figure 6B).
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Data related to the expression of OsVIT2 were generated through rice global gene expression profile data sets maintained at http://ricexpro.dna.affrc.go.jp (Sato et al. 2011a; Sato et al. 2011b).
Gerritsen, M. E. et al. In silico data filtering to identify new angiogenesis targets from a large in vitro gene profiling data set.
The PKIS data set is a kinase profiling data set containing 367 compounds.
Shown in Figure 5 is a heat map of the global biochemical profiling data set illustrating the statistical significance of changes in the biochemicals in the various pair-wise group comparisons.
P. falciparum ribosome profiling data set.
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