The second set was made of all contigs (3,152) included in the 192 clusters produced by RepeatExplorer and annotated by this tool as retrotransposons, DNA transposons, rDNA, and other repeat classes.
The assembled and annotated sequences were produced and have been organized in a dedicated database, accessible through the website, http://transcriptomics.biocant.pt:8080/deepSeaVent providing an extensive catalog of genes expressed in gill tissues harboring immune cells, the hemocytes, of the deep-sea vent mussel Bathymodiolus azoricus.
Many vocabularies and ontologies are produced to represent and annotate agronomic data.
The European eel transcriptome, the first obtained by high throughput 454 sequencing for a critically endangered species, has been produced, annotated and made freely available through a dedicated and searchable database.
Expressed sequence tags (ESTs) from each library were produced, annotated, and subjected to comparative analyses.
The transcriptome produced was annotated using Trinotate (r2013-08-26) (available at http://trinotate.sourceforge.net).net
We re-analyzed data from Nene et al. [ 15], available at DBEST http://www.ncbi.nlm.nih.gov/nucest of the National Center for Biotechnology Information (NCBI), producing an annotated and hyperlinked spreadsheet containing new information related to unique tick proteins unavailable in 2002.
We sequenced and annotated transcriptome libraries produced from the SE, along with libraries derived from the vocal motor nuclei (VMN) and the hindbrain region surrounding the VMN.
We wished to apply mass spectrometry-based proteomics on A. niger as an exemplar system with which to test the utility of proteomics to refine and process a recently sequenced and annotated genome and produce an even higher quality gene set.
That will produce even more data that have to be stored and annotated for subsequent study.
