Sentence examples for produced an alignment from inspiring English sources

A gene was considered conserved if the TBLASTN analysis produced an alignment with a minimum of 85% identity and over between 90 to 110% of the length of the query.

This produced an alignment of 1,136,727 nt.

We then produced an alignment of the LRR domain for these Chr12 genes.

This process produced an alignment of 278 sequences and 240 amino acid characters for phylogenetic analysis.

Within 55 individuals we found 25 unique sequence haplotypes for which we produced an alignment spanning 528 characters.

This approach produced an alignment of 33289 ungapped positions (not divisible by three as some gaps occur in Genbank sequences).

We aligned the genome dataset using the program MUSCLE [18] to produce an alignment that was 16017 nucleotides long.

If no reference shape is found to be in common, AR-0.73 cannot produce an alignment.

MultiPipMaker generates local alignments using the BLASTZ algorithm and only produces an alignment if identity among sequences exceeds a threshold, below which alignments are considered random [54−55].

All sequence analyses that produce an alignment use a scoring matrix (e.g. BLOSUM) to weight the probability of an observed substitution.

Phred and Phrap were used to call bases and produce an alignment (∼10×) and Consed was used for manual verification of quality [30], [31], [32].