Sentence examples for produce alignment from inspiring English sources

Since we are unaware of a viewer that is also an aligner our provided visualization is likely the most convenient way to produce alignment views generated by our method.

Show-coords, a nucmer utility, was run on the resulting nucmer delta files to produce alignment files.

As 3T3 cells grow inside of the collagen, they attach to and pull on the collagen fibers of the gel to produce alignment of the collagen fibers and contraction of the gel [28] [31].

Alignment identities of 90% can produce Simrank identities of 55-70%, and conversely, Simrank identities of 90% can produce alignment identities of 93-99%.

For paired end reads, F a represents the probability of the fragment length needed to produce alignment a from isoform j; note that the length of this fragment can be inferred from the genome coordinates of the two aligned reads and the available isoform annotation.

In this study, amino acid sequences were aligned by Muscle [ 23] to produce alignments that serve as inputs for estimating FLU.

For the alignment of coding sequence, sequences were translated, aligned at the amino acid level, and then back-translated to produce alignments at the DNA level.

In future work, we will also consider alternative structural aligners, such as TMalign (Zhang and Skolnick, 2005), in cases where they produce alignments that better conserve secondary structure.

Our implementation is scalable in terms of numbers of species and sequence lengths and can produce alignments and binding-site predictions with accuracy rivaling or exceeding current systems that specialize in only alignment or only binding-site prediction.

The regenerated data sets from MacClade were edited further to remove all gaps, then submitted to SATé to produce alignments of only ITS1-anchor-ITS2 (Table S2).

In order to produce alignments of ROSETTA-generated sequences for more than one three-dimensional structure, belonging to closely related proteins, structural alignments were produced with TOPOFIT [22], [34], [35].