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The processing was done by AV3 processing package for Matlab (Forster et al., 2005), in-house written scripts, and our Dynamo software tool for user-friendly sub-tomogram averaging (http://www.dynamo-em.org) (Castano-Diez et al., 2012).
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As a general-purpose language, Python is used in synchrotrons to control device servers [8, 15, 51], to access raw data of X-ray detectors [27], to reconstruct tomography volumes from radiographs [23, 32], and in data processing packages for macromolecular crystallography [3], azimuthal integration of diffraction data [4], or fluorescence analysis [50, 52].
An extensive literature search failed to reveal any pre- or post-processing package for the creation of diagnostic graphics based upon the use of ADAPT 5 outputs.
HTSanalyzeR interfaces with commonly used pre-processing packages for HTS data and presents its results as HTML pages and network plots.
The method was implemented as a plugin for the scientific open source image processing package ImageJ.
For analyses of the bone density the BoneJ plugin and the image processing package Fiji (; http://fiji.sc/) were used.
The firm offers what it calls a "one-stop shop" for processing, packaging and distribution.
Importantly, some data processing packages attempt to correct for fluorescence drift by adjusting the values of the FC readings.
The units are primarily responsible for the processing, packaging and sale of fresh milk to supermarkets.
Next, tissue processors and distributors can also charge "reasonable fees" for their contributions: processing, packaging, distribution, marketing and so on.
Certain EST processing packages like PartiGene which incorporates cross_match for vector trimming in their multi-step pipeline would provide downstream processing to remove the unwanted vector-similar segments and to abandon the ESTs trimmed below a set length limit.
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