Sentence examples for processing alignment from inspiring English sources

YL undertook RNA-Seq data quality control, processing, alignment, visualization, bioinformatics analyses, and helped to draft the manuscript.

The variant call format (VCF) has become the recognized data type for listing genomic variants, including single-nucleotide polymorphisms (SNPs) and insertions and deletions (indels), usually derived from processing alignment files.

It is based on the original MZmine toolbox, described in Katajamaa et al. (2007), and proposes a user-friendly and flexible set of modules covering the entire work-flow pipeline, including visualization, peak picking, peak list processing, alignment and searching in a custom library or by connecting the PubChem Compound database as well as basic statistical tools.

When processing alignments to spliceform sequences option -A 0 could be set because all parts of a read were known to match the same spliceform; this parameter is normally used to support reliable splice junction discovery through TopHat.

Full description of library construction, sequencing, read pre-processing, alignment and annotation are previously described [ 16].

These three options enable the researcher to maximize the amount of their sample being used through iterative pre-processing, alignment and evaluation.

To address these limitations, we have developed a CAP-miRSeq, a comprehensive analysis pipeline for deep microRNA sequencing data, which integrates read pre-processing, alignment, mature/precursor/novel miRNA qualification and prediction, SNV detection in the coding region of miRNA, data visualization, and differential expression between experimental conditions with biological replicates.

We developed a Comprehensive Analysis Pipeline for microRNA Sequencing data (CAP-miRSeq) that integrates read pre-processing, alignment, mature/precursor/novel miRNA detection and quantification, data visualization, variant detection in miRNA coding region, and more flexible differential expression analysis between experimental conditions.

SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments.

As such, the presented Hamming discriminator is uniquely suitable for real-time image processing and alignment applications.

Here we describe development of methods for automated multi-tilt data acquisition, tilt-series processing, and alignment which allow assembly of electron tomographic data from a greater number of tilt series, yielding enhanced data quality and increasing contrast associated with weakly stained structures.