GO classification was performed following the Blast2GO pipelines [ 59], based on a standard cut-off E-value of 1E-3 and a maximum of 20 hits of the BLAST process, and the default parameters of mapping and annotation procedure.
We employed the WAG+I+G model with four rate categories for proteins (this was the optimal model selected with ProtTest 1.3 [ 46]), and the GTR+I+G model with four rate categories for nucleotides, with normally distributed priors for the parameters in models of molecular evolution, a Yule process tree model, and default values for all other settings.
We are not proposing this process as the only and default procedure for publication of MS imaging data in the immediate future, but rather see this as a demonstration that there are no longer any technical obstacles to a public repository for MS imaging data.
ICE said Creditex, which executes and processes credit default swaps with markets throughout the U.S., Europe and Asia, will allow the exchange to meet the needs of a broader range of dealers.
Much of it will be dealt with through the slow and painful process of default and foreclosure.
The proposed manifesto aspires to facilitate this goal by making transparency, reproducibility and citizen-scientist engagement (with the knowledge-creation and dissemination processes) the default parameters for performing sound research.
Specifically, a higher content of pollutants was associated with lower functional integration and segregation in key brain networks relevant to both inner mental processes (the default mode network) and stimulus-driven mental operations.
The PANTHER classification system http://panther6.ai.sri.com/tools/compareToRefListForm.jsp was used to assess the probability of overrepresentation within the list of human orthologs of certain pathways, biological processes and molecular functions using the default Bonferroni correction for multiple testing.
Law firms and default servicing operations that process large numbers of cases have made it harder for borrowers to design repayment plans, or workouts, consumer lawyers say.
Our general hypothesis is that causality is a basic conceptual / semantic relation that is processed "by default" and more easily than other relations, such as counter-causality.
