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Sequencing data from the global and regional sample sets were computationally processed identically using EAGER v1.9278.
The corresponding fractions eluted from the GFP-alone conditioned media were processed identically and used as negative control.
The lungs were processed identically to the infected lungs.
After oligonucleotide ligation, all RNAs were processed identically.
Patient-matched normal samples were processed identically to the tumors.
All samples were processed identically and equal volumes of samples were taken for PCR assays.
All parts of each image were processed identically within each dataset.
Control cells not treated with digitonin or trypsin were processed identically.
It should be noted that all images were exposed and electronically processed identically.
Negative controls were processed identically, but were incubated only with Fab-QDs fragments omitting primary antibodies.
In these cases, all images presented within a figure were processed identically to maintain comparative differences.
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