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The raw image and processed expression of our microarray dataset is posted at NCBI's Gene Expression Omnibus database (GSE12826).
The Bioconductor method EBarrays [35], [36] inferred differential expression based on MAS 5 processed expression data, separately comparing transgenic and tumor measurements to the normal condition.
The raw image and processed expression values for our dataset are posted in a MIAME-compliant format at NCBI's Gene Expression Omnibus database (accession number GSE19948).
IB, NB, and OS processed expression arrays and were involved in data interpretation.
RA, AA, and MA processed expression arrays, performed BRAF mutational analysis, and were involved in data interpretation.
From the processed expression files, the networks were formed from the weighted correlation matrices following the protocols of WGCNA.
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Both operations basically depend upon robot hardware devices, since every service robot has different hardware capacity to process expression operations.
Scanned microarray image data were used to process expression data by Illumina Gene Expression Module of GenomeStudio Software.
> Other approaches known in literature that can process expression profiles derived from deep sequencing data are deepBlockAlign (Langenberger et al., 2012) and DARIO (Fasold et al., 2011).
The resulting data set contained processed gene expression values for 54675 probe-sets.
Raw and processed gene expression data are available at the NCBI Gene Expression Omnibus and are accessible through GEO Series accession number GSE22031.
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