"process alternately" is a correct and usable phrase in written English.
It typically means to take turns or to do something in cycles or patterns. For example: "The team alternately processed the data and analyzed the results of their experiment."
These were processed alternately for Nissl staining and Fos immunohistochemistry.
These were processed alternately for double immunostaining, either for Fos/NR1 or for Fos/GluR2/3.
This cumbersome selection process is alternately praised and cursed by foreign film producers and American distributors.
Instead of creating an alignment graph, MAS uses a recursive process that alternately identifies locally matching nodes across two networks and then splits the matching sub-graphs into connected components.
No differences were found in this functional signature among the sub-clusters for 65.7% of the orthologue groups, perhaps reflecting the limits of current annotation processes for alternately spliced isoforms.
Climbing out of her black stockings and tennis shoes and making the acquaintance of Lord & Taylor salesladies, interior decorators, and an eminent hairdresser named Mr. Kenneth has been a process that has alternately entertained and repelled her.
Mr. Stingel is among the great anti-painting painters of our age, a descendant of Warhol but much more involved with painting's conventions and processes, which he alternately spurns, embraces, parodies or exaggerates.
Selected free-floating sections at 3 different levels rostral to the optic chiasm were collected in pairs and were alternately processed for either immunoperoxidase or immunofluorescent labeling.
Subjects passing screening processes were then alternately allocated to one of two conditions: treatment (anxiety management training plus exposure therapy) or no-treatment wait-list control based on interview date.
SERE may in principle be applicable to a broad range of read count datasets such as from CHIP-seq or for comparison of alternately processed read data such as the counts of a k-mer analysis.
