In the first category (across experimental procedures), we employed two distinct methods.
In the programmed procedure, we employ the stochastic selecting algorithm to exclude rigid-body motions, the restricted step algorithm to guarantee the positive definiteness of the structural stiffness matrix, and the line search algorithm to minimize the total potential energy.
In this multiscale modeling procedure, we employ an active learning strategy based on Gaussian process regression (GPR) to minimize the number of expensive DPD simulations, where adaptively selected DPD simulations are performed only as necessary.
For the illustration of this procedure, we employ a biological model, recently adapted from Goodwin's old book by De Jong, in which one plays with the dynamics of the concentrations of the messenger RNA coding for a given protein, the protein itself, and a single metabolite.
In such a case, before starting the main consensus procedure, we employ heuristic rules of transposition and inversion to get a better initial point for consensus ordering.
In the procedure we employ auxiliary matrix T, which is derived from ChIP chip experiments and literature and indicates whether a TF can bind a gene promoter.
One of those years is used up by the lagged consumption term in Eq. 3 and another by the generalized method of moments (GMM) estimation procedure we employ [ 2, 3, 11].
Thus, in spite of the fact that we start with random codes (within the restrictions of the block structure of the code table imposed by the randomization algorithm), the simple minimization procedure we employ, in most cases, leads to codes that have a greater fitness than the standard code.
Recall that at the final stage of the PMPI procedure we employ the kmeans algorithm which seeks to minimize some error measure W K. This error measure holds the sum of all pairwise distances between members of the same cluster, across all clusters in the partition.
The experience of the birds during our hand-rearing procedure we employed would have differed from that of the wild-caught birds in several respects including the amount of early human handling received but also the quantity and quality of social interaction with conspecifics.
