We used the Full Sibship Reconstruction procedure in the program Kingroup (www.kingroup.org [28]) to establish each subordinate's relationship to the dominant.
To visualise the different nonlinear selection patterns, we compared the fitness surfaces comprising the major axes of the separate canonical rotations using the bicubic spline smoothing procedure in the program Statistica 6.0.
To examine which subset of predictor variables provided the best model explaining genetic differentiations among G. elliotii populations, the forward selection procedure in the program DISTLM forward [ 74] was performed on all sets of variables.
The global clock hypothesis was also tested using the somewhat different procedures in the baseml program in PAML [ 57].
"The V.A. is conducting a full investigation into the life insurance companies and their procedures in this program".
The models were estimated using the procedure GLIMMIX in the program SAS.
The most appropriate nucleotide substitution model for maximum likelihood phylogenetic analysis was determined with the model selection procedure implemented in the program Modeltest 3.7.
Frames from the final 6 ns of the simulation were investigated further with a clustering procedure (incorporated in the program X-Cluster, Schrodinger, LLC) that, based on the cross-RMSDs between frames, identified three structures (PDB S1, PDB S2, PDB S3, Supporting Information) as representative of all the states sampled during this part of the MD run.
A simple iterative procedure implemented in the program SignalX (as described previously in [ 31]) was used for construction of a common transcription factor-binding motif in sets of upstream gene fragments.
Modelling was performed using the graphics program O Joness and Kjeldgaard, 1997), the models were optimised using the energy minimisation procedure embedded in the program CNS (Brünger and Rice, 1997), and the illustration was made using programs Bobscript (Esnouf, 1997) and Raster3D (Merritt and Bacon, 1997).
