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As a control for the cell permeabilization procedure, we analyzed the nuclear protein BAP1 [50] and observed a substantial decrease of its nuclear staining (Fig.S11).
With this structure-based procedure, we analyzed an exhaustive set of sHSP sequences, characterized their architectural features and established sequence/structure relationships.
Using the same PWM procedure, we analyzed miRNA promoters in both Arabidopsis and rice.
By this procedure, we analyzed eye positions along the same dimensions along which we analyzed receptive field shifts.
To assess the threshold of CNM detection with this procedure, we analyzed DNAs from three controls with somatic mosaicism.
To substantiate these results using a different procedure, we analyzed the intracellular localization of the mutants by confocal immunofluorescence microscopy.
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Using this procedure, we analyze the ability of a variety of signaling architectures to transmit one-way (from upstream to downstream) signals, as key biological parameters are tuned.
As an example for the presented procedure, we analyze a simple reaction network comprising – apart from inflow and outflow – two reactions forming a switch as depicted in Figure 1(A).
To assess the reproducibility of the sampling procedures, we analyzed replicate samples collected in the same strata and compared them.
In addition to these general procedures, we analyzed EMSA for rs4728142 with special attention, given the previously reported differences [ 25], but we found no differences.
After reproducing predictions that any direct PKC phosphorylation would occur at S8, S13, S40, S62, T81, T603, and/or T613 (see Experimental Procedures), we analyzed the solvent accessibility of these residues in the Fout100 set of structural models, assuming access as a requirement for phosphorylation.
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CEO of Professional Science Editing for Scientists @ prosciediting.com