Sentence examples for procedure of alignment from inspiring English sources

Where taxon sampling had to be modified, for example, removing taxa or dubious gene fragments, this was done in the initial single data sets and the complete procedure of alignment, masking and concatenation was carried out again.

The exonic variant quality for the complete run is indistinguishable from a "standard" WGS analysis [see Additional files 2 and 3] but accomplished in only ~4 hours compared to the standard procedure of: alignment, realignment, recalibration; variant identification and recalibration; and variant annotation; which takes approximately 1 week.

The final 3-D map of the S. pneumoniae pilus was refined at 22 Å resolution (FSC = 0.5) [27] by iterating procedures of alignment and classification.

In order to evaluate the pairwise approach, we executed the feature-based pairwise alignment procedure of Section "Pairwise alignment technique'' on each RI pair of each dataset and counted the number of successful alignments.

The focus remains on images synthesized using A2 A7 DIBR algorithms and without registration procedure for alignment of the synthesized and the original frames.

This removal of hypervariable regions is conducted automatically as part of the alignment procedure of the RDP alignment algorithm [ 24], which allows for tidy comparison of sequences with the same number of positions, but also may eliminate valuable information.

Alignment was improved by iterative procedure of multi-reference alignment (MRA) and MSA.

An iterative procedure of HMMER search, alignment, manual inspection, and editing allowed us to construct full gene alignments, with annotated intron boundaries and BPs.

10 The latter has several advantages, such as online visualisation of all surgical steps without the necessity of interrupting the procedure and alignment of the OCT-image to any given zoom and focus-step of the microscope.

We describe a procedure of optimization for alignment and a new coding method for nucleotide sequence data using secondary structure models of the D2 and D3 expansion fragments of the LSU-rRNA gene reconstructed for fifteen nematode species of the agriculturally important and diverse family Hoplolaimidae, order Tylenchida.

The complete procedure of data acquisition, alignment calculation and tree reconstruction took less than one hour of computational time for the three class-specific trees and 3.5 h for the complete Chlorophyta tree on a conventional 2.0 GHz single core computer.