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When we clustered the FFPE samples using the 5444 most informative probes the correlation between non-replicate samples changed from 0.91 (using all 21178 probes) to 0.69.
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In the present article, Fourier-Transform Infra-Red (FTIR) spectroscopy and simplex centroid mixture design algorithm based studies were conducted to probe the correlation between biomass composition and laccase mediated lignin degradation.
Unfortunately, the authors did not probe the correlation between the rural service experience and willingness to continue service in rural areas, although their study implies that this was not the case.
For example, Balázsi et al. (2003) showed that spacial placement of microarray probes affected the correlation between gene expression patterns, causing genes to be more or less correlated depending on the proximity of their respective probes on the array.
This research attempts to probe into the correlation between the residential building layout and ventilation performance of various spaces in an operative level.
We then computed an averaged gene expression profile for each strain-sex combination using all probes and computed the correlation between groups.
To assess whether the degree of hybridization of the probes is affected by sequence identity between human and Cynomolgus macaque, we took the CM-probes and computed the correlation between their detection p-values and alignment quality.
With this subset of probes, we then calculated the correlation between sample i in tissue s and sample j in tissue t; call it r i j s t.
For each probe-set, we assessed the correlation between the expression profile with age and a template that described a peak or trough in expression level between ages 15 and 25.
When minimal probe pressure was applied, the correlation between changes in BFI and changes in MAv yielded R-values of 0.79, 0.82 and 0.86 for DCS source-detector separations of 0.5 cm, 1.5 cm and 2.5 cm, respectively.
Finally, to reduce the size of the data to a level suitable for subsequent network analysis and to reliably compute the correlation between probe levels, we eliminated probes with variability in the bottom 25% of any data set, as measured by the lumi function estimateLumiCV.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com