There's a beautiful, eroticised Apollo from Christopher Ainslie, and conductor Richard Farnes eloquently probes the score's tricky amalgam of tortured chromaticism and gamelan-based exoticism.
Graf and coworkers expanded on these results by developing a probe uniqueness score (U) based on the number of unique substrings of sequence within a given target region[22].
For CNV detection, we set up three criteria for CNV calling: the number of minimum consecutive probes; a threshold cutoff; a consecutive probe (island) score cutoff.
The list of gene and/or probes, the scores and the group categories for each signature can be obtained from supplemental data, available at Annals of Oncology online.
We then compared these PWM-based probe score predictions with the actual probe intensities using (1) the Pearson correlation coefficient and (2) the AUROC of 'bright probes' (defined by transforming all probe intensities to Z-scores, and selecting probes with Z-scores ≥ 4), following (Weirauch et al., 2013).
Therefore, probes with decreased methylation in periodontitis will be referred to as negative probes (negative methyl score), and probes with increased methylation will be referred as positive probes (positive methyl score).
To assess the accuracy of memory, we also calculated the probe score by dividing the error score derived during the probe test by the total number of recorded frames (a frame/0.5 sec×60 sec = 120 frames).
There was also a significant difference among the three groups according to the first trial's probe score (p = 0.0094; Kruskal-Wallis that), that is, the probe test version of the error score divided by the total number of recorded frames (a frame/0.5 sec×60 sec = 120 frames).
For microarray data, this involves the calculation of a probe-level score and applying a statistical test to the groups of probes within a specified distance from the region of interest.
The intensity values for probes included in the analysis were transformed by taking the Natural Logarithm of 0 plus the probe score.
