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In the absence of DNA replication a mismatch will be repaired with equal probability to fix the mutation or to restore the wild type sequence.
Indeed, genetically close populations have a greater probability to fix the same deleterious alleles because of their common genetic history.
The relative bias toward short elements in the copperhead could be caused by a greater tendency to generate shorter elements (at the time of insertion), a greater probability to fix shorter elements, and/or a greater probability to delete long elements at any time via ectopic recombination, which has been proposed to occur in the anole lizard genome (Novick et al. 2009).
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This means that rare alleles have the lowest probability to get fixed and thus the highest probability to get lost.
Hence, for high enough values of θ, fixing the transmission rate and having the error probability vary in each block provide better performance than requiring the error probability to be fixed by varying the rate.
This suggests that lateral regulators that have introgressed near their target genes have a higher probability to become fixed within the recipient.
Here, the threshold λ(D) is selected to fix the probability of detection at PD = 0.8.
As a by-product, the knowledge of the Gibbs measure provided by this analysis allows a posteriori to fix the probability distribution of V k ( s ).
Suppose that the process of human conception is indeterministic, so that conditioning upon all of the causes only serves to fix a certain probability for conception.
To be conservative, we can consider the case where a single restorer allele, if it arises in time, is able to fix with 100% probability and prevent extinction.
Pairs of two individuals are then selected using the tournament selection method and have a probability to be recombined, fixed at 75%.
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