Exact(5)
Prior matrices were taken from supporting data of MacIsaac et al. (filename v1.tamo).
The prior matrices are in logodds format, in most cases using genomic single-nucleotide frequencies for the background model; they were converted to position weight matrices that give the probabilities of individual nucleotides.
The original DAGs were used to obtain distorted prior matrices.
The values in the prior matrices needed to be discretized to differentiate links from non-links.
There was an element of randomness in the prior generation, so we created five 'replicate' prior matrices for each level of accuracy and true network, resulting in a total of 150 synthetic functional association priors (6 accuracy levels × 5 true networks × 5 replicates).
Similar(55)
He joins a list of prior Matrix participants that reads like a compendium of seminal contemporary artists, including Willem de Kooning, Andy Warhol, Keith Haring and Sol LeWitt.
To this end, we construct input-output tables for all 22 dairy manufacturing enterprises owned by Fonterra in New Zealand from (a) a qualitative prior matrix, and (b) data on total inputs and outputs of products.
As mentioned in the introduction, we construct the 22 enterprise input-output tables based only on two sets of data: (a) a qualitative prior matrix, and (b) data on total inputs and outputs of products.
These distributions were sampled to create the prior matrix.
The prior matrix can be obtained in numerous ways.
Pairs of genes without prior information have zero values in the prior matrix.
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