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A lag of 0-1 days was chosen for principal analyses based on model fit statistics from preliminary analyses, but lags of 0 through 7 days were tested.
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Principal components analyses based on splicing factor gene expression corroborated these results.
Principal component analyses based on these DEGs confirmed the correlation between replicates and the differences between cells at the three stages of reprogramming.
Hierarchical cluster and principal component analyses based on genetic distance matrices identified distinct populations clustering mainly according to their origin/pedigrees.
Subsequent principal coordinates analyses based on pairwise nucleotide similarities of the six groups showing a similar behavior revealed that in five out of six cases the reconstructed genome represented a central genome within the group (Additional file 1: Figure S1).
Because of the categorical nature of the item scores, Pearson product moment correlations underestimate the correlation of the underlying latent trait, and consequently the parameter estimates obtained in factor analyses or principal component analyses based on the Pearson correlation matrices are biased (Dolan 1994).
The software STATISTICA [ 58] was used for all analyses based on the principal component loadings for each lizard that were extracted from Matlab.
We also used sub- scales of the NPI-Q in the analyses, based on a previous large principal component analysis conducted with data from Norwegian nursing home patients [ 23].
FIS values are shown in Additional file 7. Our phylogeographic and population genetic analyses based on eight microsatellite markers identified five principal clusters of populations in the Italian vairone.
We utilized PCA (the first four principal components are provided in Supporting Dataset 3), and performed GO term analyses based on PCA scores.
So they run scenario analyses based on those figures.
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