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In North America, white and black spruce (Picea glauca and P. mariana) interface with tundra, whereas in Siberia and northern Europe larch (Larix) is the primary tree line species.
In SPT scheme, a given multicast session is first provisioned as a primary multicast tree, and then each segment on the primary tree is protected by a multicast tree instead of a path, as in most existing approaches.
The user can select either BP or CC as the "primary tree" for visualization.
GO-2D firstly displays the primary categories (e.g. BP, user defined) in the primary tree, and then in the secondary tree, shows the sub-hierarchical structure of the secondary categories (e.g. CC) within each primary category (see Figure 3).
When some modules share a same primary category in the primary tree (e.g. BP), GO-2D focuses on the combined category containing the most specific secondary category in the secondary tree (e.g. CC).
Maximum likelihood analysis was performed under a variety of substitution models (Jukes-Cantor, Kimura 2-parameter, Felenstein 81, Felenstein 84, Tamura-Nei 93 and General Time Reversible) as implemented by the PHYML programme [ 105, 106], using the phylogenetic tree produced by NJ analysis as the primary tree.
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The primary trees are mangroves, which are all down along the edges of the lagoon".
Actually, and up to our knowledge, the only types of phylogenetic networks that explicitly distinguish between the primary, tree-like, line of evolution and the secondary lateral gene transfers that have been studied in the literature are those in [ 18] and those in [ 21, 22].
This result suggests that the qualitative observation that primary trees appear broader and deeper than metastatic trees (Fig. 1) captures a robust quantitative property of progression trees distinguishing primary from metastatic samples.
Therefore, the Bayesian majority-rule consensus trees inferred from non-gap-coded datasets were chosen as the primary trees for the present discussion, support values of the other two categories of analysis being superimposed on the prior Bayesian nodes.
Despite the decreased overall length of basal dendrites, there were no differences at the level of the primary or secondary apical tree (Fig. 1E) or basal tree (Fig. 1F).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com