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Then in a second phase, portions of these primary duplication blocks are copied and reinserted into the genome at disparate loci forming secondary duplication blocks.
In this model, a first phase of duplications copies duplicons from the ancestral genome and aggregates these copies into primary duplication blocks.
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We found that such duplication blocks contained protein-coding genes.
Our goal is to compute a putative duplication history that accounts for the construction of all of the duplication blocks.
Five duplication blocks showed a very low or level of expression and the duplication block located on chromosome 12 (Solyclearly630.1.1 -showc12g013640.1.1) clearly show the presence of one active copy.
They posited that clades represent families of evolutionarily related duplication blocks and that core duplicons 'may have driven the evolution of the duplication blocks' in a clade.
By our method of identifying segmental duplication blocks [ 20, 21], approximately 75% of the euchromatic portion of the Arabidopsis genome exists in at least one duplication block.
Gm5 shares duplication blocks with three other soybean chromosomes (Gm8, Gm17, Gm19) while Gm8 shares duplication blocks with Gm5, Gm7, Gm12, Gm15, and Gm18.
In this model, ancestral duplicons are first transposed and aggregated into one seeding block, which subsequently produces secondary duplication blocks.
Our DAG also reveals which duplication blocks may have seeded many other blocks (i.e. those with high out-degree).
Results: We introduce parsimony and likelihood techniques to analyze the evolutionary relationships between duplication blocks.
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