8 This was done by pooling logit transformed proportions to preserve symmetry and normality of the mean.
Low NEAP can be achieved even while preserving the proportion of energy derived from dietary protein.
The robustness of these ranks was evaluated by subsampling 10% of the GS 1000×, while preserving the proportion of active/inactive calls, and calculating P-values (Supplementary Fig. S2).
To correctly obtain the z-score distribution we took into account the relatively rich concentration of CpG di-nucleotides in the promoters of human and generated our shuffled dataset by preserving the proportion same.
Conversely, in cohorts of transplant recipients with doubling times similar to ours, our model suggest that the interval between screening can be extended to 10 days while still preserving a proportion of first infections diagnosed with an undesirably high viral load below 5%.
Moreover, BMIQ successfully matches the tail-ends of the type1 and type2 distributions, while faithfully preserving the proportions of unmethylated and methylated probes within each of the two designs.
In active UC patients, although Treg are functionally preserved, their proportion in peripheral blood decreases.
The reason to preserve the proportion is to retain the GC-rich property of the promoter in the shuffled sequences.
Since we exclusively considered the promoter region for shuffling, we thereby preserved the proportion of all the nucleotides in the shuffled sequences as that in the promoter datasets.
In the inner loop, a repeated (5 times), stratified (to preserve the proportion of the two classes in all training and testing splits), fivefold cross-validation was used to define the number of features that maximized the AUC.
To test for the contribution of differential sub-genome composition per chromosome, we assigned genes to chromosomes in a way that preserved the proportion of LF, MF1, and MF2 genes on each chromosome.
