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Except for qSTIY5.1, the heat susceptible parent IR64, contributed the heat sensitivity allele for both the spikelet sterility and yield QTLs. qSTIY5.1 and qSSIY5.1 are one and the same as they are present in the same genomic region.
It will remain, however, difficult to differentiate the divergent parental alleles from duplicated loci present in the same genomic location.
This suggests that, in the common ancestor of X. oryzae strains, META-B may have been already present in the same genomic region as the XaPPTase gene.
To verify whether the orthologous regulatory genes are present in the same genomic context, neighbouring coding sequences were included into synteny analyses.
Interestingly, 2 Bombyx Wtrw genes, encoding BmWtrw1, which forms a clade with DmWtrw and TcWtrw, and BmWtrw2, which forms a clade with PhWtrw, have also evolved by duplication since they are present in the same genomic scaffold (data not shown).
For all 6 genes we confirmed by sequencing that the TE annotated in Col was present in the same genomic location in Ler and Cvi with no major sequences changes except for a few SNPs.
Similar(53)
Hence, as in nuña bean, the detection of co-localized QTLs for popping traits suggested that either pleiotropic QTLs controlled several popping traits, or tightly linked QTLs for different traits are present together in the same genomic regions.
Although the core genome (∼80%) had an average nucleotide identity of 98.51%, both AltDE and AltDE1 contained flexible genomic islands (fGIs), that is, genomic islands present in both genomes in the same genomic context but having different gene content.
In all cases the annotated TE is present at the same genomic location as in Col and contains a few SNPs but no major sequence alterations.
As detailed above, in the revised version we have further validated allele-specific imprinting for four genes and demonstrated that the all of the TEs associated with allele-specific imprinted genes are present at the same genomic location in all three strains.
In the present study, 'QTL23_SC' located in the same genomic region as 'Qsch7a' explains only 0.2% of the variation.
More suggestions(15)
present in the delimited genomic
present in the weighted genomic
present in the same normal
present in the same viral
present in the hybrid genomic
present in the same cellular
present in the respective genomic
present in the noncoding genomic
present in the additional genomic
present in the full genomic
present in the same spatial
present in the upstream genomic
present in the corresponding genomic
present in the clinical genomic
present in the same genes
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