Sentence examples for prepared for alignment from inspiring English sources

The reads coming from sequencing of 5′- and 3′RACE PCR products from Hiseq2000 sequencer were prepared for Alignment by trimming the adapters from the beginning and the end of the reads using PERL programs.

Next the sum of sequence counts of identical reads after truncation are calculated and separate files for all sequence lengths are prepared for Eland alignment (step 4).

An amino acid alignment and corresponding cDNA alignment were prepared for each analysis.

Then reads are aligned to the reference genome (UCSC hg19 [ 28]) and the alignment is prepared for variation calling trough a series of steps: format conversion, sorting, local realignment around INDELs and Base Quality Score Recalibration.

Alignments were prepared for use in phylogenetic reconstructions as follows.

Alignments were prepared for figures using Jalview (Waterhouse et al. 2009).

Following alignment, a pileup format was prepared for each sample using SAMtools [ 24].

To detect gene conversion events, sequence alignments of all sequences were prepared for each species individually.

Sequence alignments of identified riboswitches were prepared for publishing using the TEXshade package [ 61] and an ad hoc unpublished program (MK).

Sequence alignments excluding all nonsynonymous sites for each locus were prepared for molecular clock analysis.

Alignments (BioEdit; [ 25]) containing available CaPV sequences (GenBank) were prepared for the RNA polymerase subunit RPO30, DNA topoisomerase I and the P32 regions.