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Additional file 12, Table S6, lists 349 2ROs preferentially expressed in brain (preferential expression measure >0.4).
Both vimentin and keratin were equally expressed in five lines, one line showed strong preferential expression of keratin and one line showed preferential expression of vimentin.
Preferential expression of one allele over another can be detected by differences in transcript number.
Quantitative analysis of the tcER1 mRNA level demonstrated the preferential expression in the ovary.
Statistical analyses revealed a significant link between the preferential expression of these molecules and invasiveness.
After performing significance analysis of microarrays (SAM) on the data installed in MultiExperiment Viewer (MEV) (Saeed et al. 2006), we identified 699 probes with preferential expression in japonica and 118 probes with preferential expression in indica.
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Whereas Os1-CysPrxB showed a root/embryo-preferential expression pattern, Os1-CysPrxA was preferentially expressed in the endosperm.
We did not identify co-expressed genes for Os1-CysPrxA, which had a seed-preferential expression pattern (Fig. 6).
Os1-CysPrxB showed embryo- or root-preferential expression, while Os1-CysPrxA showed endosperm-preferential expression.
AtPrxIIC showed root- and pollen-preferential expression patterns.
Three of the six -- LEAFYATAG, WUSATAg, and OSE1ROOTNODULE –appear necessary for root-preferential expression while two others -- GAREAT and GARE1OSREP1 – are related to embryo-preferential expression.
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