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The binding sites have been analyzed in terms of binding propensity, amino acid-nucleotide pair preference, binding motif etc.
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Although it is clear that PTB has a preference for binding to pyrimidine tracts, the connection between PTB binding and inhibition remains elusive.
Using information about sequence preference for binding of particular transcription factors, one can identify possible regulatory binding sites within a sequenced genome.
While the computed preference for binding of the strand containing Pro might be slight, the impediment to further binding by other strands is quite large.
Recombinant Delta toxin showed a preference for binding to GM2, in contrast to Beta toxin, which did not bind to gangliosides.
The information obtained about the preference of binding site residues and nucleotides has been used to identify the potential motifs in protein and RNA for binding.
In other words, it explains the preference for binding over accommodation (van der Sandt 1992).
Moreover, other research shows that some of the PYR/PYL proteins have preference on binding to different ABA format.
HupBMtb displayed substantial preference in binding to AT rich DNA.
All are nuclear proteins with considerable similarity in their DNA sequence preference for binding to DNA.
In total, 57% of all sites were located in the transcribed region of at least one gene with a preference for binding within introns (Figure 6).
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