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Secondary structure predictions were computed using PSIPRED [ 61, 62].
For GMACE, genomic predictions were computed using only the domestic proven bulls rather than all 8,073 proven bulls.
On the calibration plot the histogram of the predicted values is also represented, showing how they are distributed between 0 and 1. Joint model and predictions were computed using the R functions frailtyPenal and prediction from the R package frailtypack [ 14].
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This is particularly so when predictions are computed using B, but also when obtained from δ (green or blue lines vs. black and yellow solid lines in Figure 1, Figure 2, and Figure 3).
Finally, via numerical examples, the predicted diameter error on a workpiece, the ratio between the coupled cutting force and its nominal value along the part axis as well as the influence of the cutting force components on the error prediction are computed using the proposed model.
This prediction was computed using (i) all microbial genomes, (ii) only genomes from a different species than the actual host (i.e., the genome in which the viral sequence was originally detected), and (iii) only genomes from a different genus than the actual host.
The cross-validation approach used by Rahman et al 7 and Teklehaimanot et al 9 excluded 1 year of data at a time, the model was fit to the remaining data, forecast errors (prediction residuals) were computed using data from the missing year and then this process was repeated for subsequent years.
Therefore, TransTermHP predictions for Microcystis were computed using TransTermHP 2.06 with default parameters, while for Synechocystis, Synechococcus and Thermosynechococcus existing predictions were downloaded from the TransTermHP website.
All orthology predictions and functional transfers were computed using the species overlap algorithm as implemented in ETE 2.0 (2.0.
Align-GVGD predictions and SIFT score were computed using the ortholog alignment of exons 2 to 14 of CHEK2 derived by using Alamut software (Interactive Biosoftware, Rouen, France) [ 32].
To investigate the enhancement of experimental permeances over theoretic prediction, the Knudsen permeances were computed using Equation 1.
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