Sentence examples for predictions we ran from inspiring English sources

To test the IEL predictions, we ran our own experiments at the California Institute of Technology.

To determine the effects of these SNPs on gene predictions, we ran the gene prediction program SNAP [8] with identical parameters on the vdB and vdB* genomes.

To compare our proteomic observations to such predictions, we ran signalp on all proteins in the genome.

Since there was no difference between states in response to the neutral sounds in the clusters from figure 1 (table 1), following our prediction we ran a follow-up 2*2*2 ANOVA using only negative and positive sounds in a voxel-wise analysis.

Before using miRDeep2 for novel miRNA prediction, we ran the software on the unsieved and entire samples comprising of the annotated and unannotated reads.

For prediction purposes, we ran Weka in prediction mode with the saved model files on the prediction set, and obtained the results as CVS files which were processed in Excel (Data reported in Dataset S1 in Dryad, Nag et al., 2013).

The forgetting parameter φ also affects the model's prediction, so we ran simulations in which φ was set at 0 (i.e., no forgetting over the whole season), as in [2], [7].

In order to predict domains, we ran Pfam prediction locally [ 37].

For example, a gene with feature ID 1293 on contig 25 might have the name CDC_NME_M13320_025_1293. To validate the overall accuracy of the gene prediction stage of the pipeline, we ran our gene prediction tools on the genome of Escherichia coli K12, one of the best-annotated bacterial genomes (analysis described in the Supplementary Material).

To estimate the contribution of repeatability, heritability and PE effects to the variance in mating behaviour (prediction 4a and 4b), we ran two GLMMs to partition the contribution of these terms to the overall phenotypic variance (VP).

We ran each prediction strategy for both wild type and mutated sequences and determined whether the mutation(s) changed the localization prediction.