The interpretation of these results is not completely clear, as the predictions involve a patchwork of different bacterial β-barrel structures.
In other words, in diagnostic prediction, the interest is in principle a cross-sectional relationship, whereas prognostic prediction involves a longitudinal relationship.
Often, function prediction involves an intermediate step where clusters of densely interacting proteins, called modules, are extracted from the network; the dense subgraphs are likely to represent functional protein complexes (Sharan et al., 2007).
Predictions involving any contig that exhibits a full-length, collinear alignment to any single wild-type transcript are removed from the final output.
The thing, however, is that all of these bad predictions involved stepping outside the models I understood.
Post-processing of predictions involved the removal of targets with correlated activity due to overlapping bioactive compound annotations.
The error incurred due to packet loss becomes propagative due to the two types of coding predictions involved in H.264/AVC encoders, namely, intra-prediction (spatial) and inter-prediction (temporal) at the encoder end.
In particular, only 104 (33%) of 322 high-confidence LGT predictions involved species from distinct Listeria clades.
Both of these predictions involved NF-Y homodimers, as did yet another of the predictions (Additional file 6: Figure S4A).
It achieves higher accuracy by treating separately predictions involving either an arginine or a glutamic acid residue.
