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There were some places where our new model's predictions differed from those of Shinto's model.
Cases where EcoCyc 18.0 GEM essentiality predictions differed from experimental gene-essentiality results for aerobic growth on MOPS medium with 0.4% glucose, and posed open biological questions or highlight metabolic network interactions of particular interest in EcoCyc 18.0 GEM.
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Because the RNA-seq data was obtained from the inbred line YW5AF7, which is different from Hawaii4×4 on which the prior genome assembly was based, there remains some possibility that TowU_Fve predictions differ from the prior annotations because of genome sequence differences between the two lines.
The model predictions differ from the empirical observations systematically: predictions for pairs of stocks from the same industry are on the whole much less accurate than predictions for pairs of stocks from different industries.
On the other hand, the accuracy factor indicates the extent to which the predictions differ from the observed data.
In our analysis of the model by Covert and Palsson [ 19], we found five cases in which OT predictions differ from rFBA predictions.
These predictions differ from those in RMV and PMV because of a simple composition effect [note that r d ⁎=(Rr R ⁎+ Pr P ⁎)/ N].
Our predictions differ from those of a previous study (Simon et al., 2010) which suggested that Fj acting only on Ft would not result in a cellular asymmetry of activity: the origin of this difference is that in our model (in accordance with our experimental observations) the Ft and Ds populations are mobile and able to redistribute to the most favourable cell edge.
In comparison, the IGRF-10 SV prediction differed from the IGRF-11 model by 21.5 nT/yr.
The Taxy prediction differed from the 16S result by 19.6 p.p. in this phylum, while CARMA, Treephyler, Phymm and Galaxy differed by 17.5, 18.0, 26.9 and 30.8 p.p., respectively.
In cases where the model prediction differed from the clinical data should this be viewed as a short-coming of the model's credibility or is it a scientific finding?
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