Second, unlike the development set, the evaluation set of predictions contained all residues that we defined as surface residues, regardless of whether they received a score from all predictors.
Conversely, a click on the links that are given in the 'Position assembled precursors', 'Similarity assembled precursors' and 'Target ranking group' columns leads to tables containing all the predictions matching the selected ranking group.
The default output is a PDF file containing all TSPs with prediction scores from the classifier.
We have built a public database containing all sequence alignments and functional predictions, and we expect this to be a valuable resource to the malaria research community.
Note that, one way of performing prediction mode decision would exhaustively search the possibilities within a set containing all possible modes, which results in an undesirable complexity.
Genes were split into two sets: training/development and prediction, where training/development set contained genes with known MAE or biallelic status, and the prediction set contained all genes with unknown status.
We also recently release a database, GreenPhylDB containing all the precomputed orthologs predictions and the associated tools [ 26].
Even if the GrapeMiRNA database contains all the predictions that were produced by FindMiRNA, the online version is limited to the 5,778 selected exon predictions that are supposed to represent the most reliable subset of the total FindMiRNA output (Table 4).
MEI-S332 is the only Sgo family member identified in Drosophila, and thus one prediction might be it would contain all of the activities ascribed to Sgo proteins in mitosis and meiosis in other organisms.
Given the strict constraints, this group will not contain all miRNA/target pairs (and includes no predictions for a subset of the known miRNAs).
