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The annotations for the closest match in the training set (determined by E-value) were used as predictions, and predictions for a protein were taken to be the predictions for all its domains.
Redundant QRNA predictions and predictions that aligned to annotated coding sequences were removed.
**Includes 28 false positive predictions and predictions for 20 substrates not included on the various Biolog plates.
Sensitivity and specificity values were calculated at the nucleotide, exon, intron and gene-level for CodingQuarry predictions and predictions made by TransDecoder and AUGUSTUS.
The average posterior probabilities in the "prediction period" are outputted as final predictions, and predictions of this method is denoted as "IMRF2".
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The next measurement point is selected by using predictions and prediction uncertainty of geometric deviations provided by non-parametric statistical models, known as kriging models.
In predictive coding, surprise or free energy is minimized at each level of the cortical hierarchy by changing levels of activity in neuronal populations encoding predictions and prediction errors, namely prediction units and prediction error units.
This is important because one cannot include separate regressors based on predictions and prediction errors in the same design matrix.
TMBpro is based on secondary structure predictions and prediction of residue contacts in potential transmembrane β-barrels.
The purpose of the time-series analysis was to compute expected values (point predictions) and prediction intervals to 2050 for fertility, mortality and net migration in each country.
In this (hypothetical) scheme, predictions and prediction errors are encoded by the neuronal activity of deep and superficial pyramidal cells, respectively (Mumford 1992; Bastos et al. 2012).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com