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Finally, the above predictions and annotations were reconciled with the genes predicted and annotated through the Integrated Microbial Genomes Expert Review (IMG-ER) pipeline [ 124].
Liu X, Jian X, Boerwinkle E. dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations.
Liu, X., Jian, X. & Boerwinkle, E. dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations.
Using SIPHT, predictions and annotations of putative sRNA-encoding genes were conducted in 932 bacterial replicons yielding 45,599 candidates for previously unannotated intergenic loci.
The speed and ease with which searches can be executed using SIPHT will enable kingdom-wide predictions and annotations to be updated frequently as new data become available.
This modularity will also allow new programs and/or improved versions of existing programs to be added to SIPHT to improve the reliability of its predictions and annotations.
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We used an oligonucleotide microarray based on gene predictions and annotation from the honey bee genome sequencing project [18].
Instead, gene predictions and annotation were transferred from the Schu S4 genome, with features that overlapped SNPs and/or indels adjusted as necessary.
These types of scenarios are relevant to current challenges in modern biology regarding improving the accuracy of function predictions and annotation of the large population of hypothetical proteins.
Variant effect predictions and annotation was added using snpEFF and dbNSFP.
ADZ, SR carried out the protein-coding gene structure predictions and annotation.
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