Based on our prediction, a total of 38 novel putative genes encode mitochondrial proteins.
By de novo prediction, a total of 166,164 (23,288 piRNAs with read numbers > 5) candidate piRNAs were predicated.
Based on genome mapping and the miRbase results and hairpin prediction, a total of 55conserved miRNAs derived from B. napus were identified, including 41 miRNAs and miRNAs* (22 families) were firstly identified together with 14 already in miRbase (Additional file 1: Figure S1, Additional file 2: Table S2).
Based on miRDeep prediction a total of 12 novel miRNAs showed similarity in the seed region with the known miRNAs indicating that these miRNAs are likely to belong to the same family and thus may share common biology (Additional files 7 and 8).
We received predictions from a total of 27 teams for the CHEMDNER challenge: 26 for the CEM task and 23 for the CDI task.
The contigs produced by Velvet were postprocessed using Oases yielding 85,555 loci (gene predictions) comprising a total of 117,594 extended contigs with an average length of 1,374 bp.
Evaluation of dispersion model predictions using a total of 57 PM10 Swiss central-site monitors has been described elsewhere (Liu et al. 2007).
The scientific community can browse predictions for a total of 5035 TF models and receive classifications for submitted nucleotide and protein sequences.
The scientific community can browse predictions for a total of 2152, 3623, 444, and 916 TF models of B. distachyon, maize, barley, and wheat, respectively, as well as 1597 and 2205 TF models of rice and sorghum.
Secondary structural predictions identified a total of 21 small RNA species that were derived from genomic loci whose surrounding sequences had the probability to form hairpin structures that met the requirements as a miRNA precursor.
