Exact(5)
Figure 1 Prediction ratio for large flows as a function of distance.
For evaluating accuracy, we compute two type of positive cases: correct influence calculation ratio and correct influence prediction ratio.
Only flows above 100 passengers are shown, and the color intensity at each point represents the total passenger flows aggregated under a certain distance and prediction ratio.
Using this modified scheme, the penalization will be 2 χ α,4 + χ α,12, which constitutes considerable savings, thereby increasing better prediction ratio (in terms of sensitivity and specificity).
In addition, we have also compared the resulting performance of ReLA with the prediction ratio of other reported TFBS-based search tools: TFM (Tonon et al., 2010) and rVISTA (Loots and Ovcharenko, 2004), as well as with that of TSS predictors: ARTS (Sonnenburg et al., 2006); Eponine (Down and Hubbard, 2002) and PromoterExplorer (Xie et al., 2006), all of them run on the same regions (Table 1).
Similar(55)
Histograms show the correct prediction ratios a for test set 1 and b for test set 2 at the top-k (k = 1, 2, 3) metric, respectively.
For example, the average prediction ratios attain >99.0% for all data under the 100 trials of 50% HOCV.
Moreover, Figure 3 shows MICA-SVM's leading advantages over its four peers: PCA-LDA, PCA-SVM, ICA-SVM, and SVM, in terms of the average classification rates, sensitivities, specificities, and positive prediction ratios under the 10-fold CV.
The over-prediction ratio ranged 0 7.9 (average 2.3).
The second measure (over-prediction ratio, related to equation 1 in Hijmans and Graham [65]) is the ratio of the area of ENM-suitable habitat to the phylogeographic-predicted area; we assume that over-prediction ratios much larger than unity represent poorer LGM distributional reconstructions.
In general, the shape of the duration ratios obtained largely differ from those presented in Kottke and Rathje [3], which follows the same shape of the over-prediction ratios (αAF, Fig. 8).
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