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We observed that angiosperm insert sequences are predicted to include a disordered, region, so are all vertebrate sequences and nematodes.
The lost structural contact with the main body of the mitoribosomal LSU is substituted by MRPL52, which is predicted to include a long α-helix.
Interestingly, the biosynthetic gene clusters of at least four of these antibiotics are predicted to include a gene encoding a radical SAM enzyme.
Phylogenetic studies identified ∼19 conserved nucleotides within a secondary structure predicted to include a three-helix junction, a downstream hairpin, and an RNA pseudoknot (PK) (Pijlman et al., 2008).
Kinking of either of the two hinges will result in considerable local distortions, predicted to include a spatial redeployment of amino acid side chains and changes in the overall length, flexibility and general topology of the Bridge Helix domain.
However, to establish whether the fungus did have a functional GH6 gene, we screened the EST library for GH6 homologs and identified one complete transcript that was 72% identical at the amino acid level to Agaricus bisporus cel3AC [GenBank:AAA50608] and predicted to include a CBM1 and thus to specifically bind to cellulose microfibrils [ 27, 31].
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Future changes are predicted to include an increase in 'mega-heatwaves' such as those experienced in Europe in 2003 and 2010 [ 35].
More contigs are likely to be predicted to include full-length ORFs, if a different ORF finding procedure is applied.
In addition, the authors suggested putative "maternal effect structures" of the mouse MII-stage oocytes that they have predicted to include maternal effect proteins playing a central role in mediating the oocyte-to-embryo transition: cytoplasmic lattices, multivesicular aggregates, spindle apparatus, subcortical maternal complex, endoplasmic reticulum, and microtubule organizing centre.
The secondary structures of the EBERs are predicted to include extensive double stranded regions with a number of short stem loops [3], [6].
This region is predicted to include many O-glucosylation sites, suggesting a putative difference in glycosylation between the two FGF5 proteins.
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