Sentence examples for predicted template from inspiring English sources

Many of these amino acids occur in regions that influence the predicted template channel, including the bridge helix of the largest subunit, a highly conserved structure from bacterial to eukaryotic polymerases over which the template strand passes en route to the active site [19], [27], [28].

The method returns a confidence score for the predicted template loops and has the advantage of being very fast (on average: 1 min/loop).

The best predicted template(s) are used to build the structure of H3 that are subsequently ranked according to their intramolecular interactions.

A BLAST search was conducted with each of the predicted template sequences in order to insure that probes did not detect other known mRNA species.

In all these packages, sequences are associated with a predicted structural template (RNA secondary structure).

Both predicted and template protein structures were rendered with PyMOL (The PyMOL Molecular Graphics System, Version 1.3, Schrödinger, LLC).

The structures of the individual domains are then predicted using template-based modeling or ab initio modeling.

This implies that the structures of many new proteins can be predicted using template-based methods.

The templates are then used by ad hoc algorithms to accurately align the sequences while taking into account the predicted structures (templates).

Short loops are efficiently modeled using ab-initio methods (i.e. LEAP) due to the small number of degrees of freedom, which permits an adequate exploration of the conformational space, while long loops are more effectively predicted using template-based methods (i.e. LoopIng).

GeneSilico MetaServer (https://genesilico.pl/meta2) [ 71] which uses a consensus approach to predict the template for model building was also employed to have better confidence and to ensure the sensitivity and accuracy of template selection for AGPase SS.